info.sswap.api.input.io
Class SSWAPDeserializer
java.lang.Object
info.sswap.api.input.io.SSWAPDeserializer
- All Implemented Interfaces:
- InputDeserializer<SSWAPType>
public class SSWAPDeserializer
- extends java.lang.Object
- implements InputDeserializer<SSWAPType>
Creates Input objects from a given SSWAPType using several heuristics. The heuristics used include
flattening nested intersection and union elements, combining multiple restrictions on the same property under one
PropertyInput, and so on. Recursive class expressions are detected and an AtomicInput is created when
in such cases.
- Author:
- Evren Sirin
|
Method Summary |
private void |
addDomainRestrictions(aterm.ATermAppl p,
java.util.List<Input> inputs)
|
private java.util.Iterator<aterm.ATermAppl> |
argIterator(aterm.ATermAppl term)
|
private void |
cacheDefinitions()
|
private void |
copyLabelAndDescription(Input source,
Input target)
|
private Input |
createInputFromList(java.util.List<Input> inputs)
|
private Input |
createRangeInput(aterm.ATermAppl p,
Input additionalRange)
|
private InputValue |
createValue(aterm.ATermAppl term)
|
Input |
deserialize(SSWAPType type)
Deserializes an Input instance from the given object. |
private boolean |
isRestriction(aterm.ATermAppl cls)
|
private com.google.common.collect.UnmodifiableIterator<PropertyInput> |
propertyInputs(java.util.List<Input> inputs,
java.net.URI prop)
|
private void |
setLabelDescription(Input input,
aterm.ATermAppl term)
|
private Input |
visit(aterm.ATermAppl cls)
|
private void |
visit(aterm.ATermAppl cls,
java.util.List<Input> inputs,
boolean isSuperClass)
|
private void |
visitAllValues(aterm.ATermAppl allValues,
java.util.List<Input> inputs)
|
private void |
visitCard(aterm.ATermAppl card,
java.util.List<Input> inputs)
|
private void |
visitIntersectionOf(java.util.Iterator<aterm.ATermAppl> intersection,
java.util.List<Input> inputs)
|
private void |
visitIntersectionOf(java.util.Iterator<aterm.ATermAppl> intersection,
java.util.List<Input> inputs,
boolean isSuperClass)
|
private void |
visitMax(aterm.ATermAppl max,
java.util.List<Input> inputs)
|
private void |
visitMin(aterm.ATermAppl p,
int cardinality,
aterm.ATermAppl type,
java.util.List<Input> inputs)
|
private void |
visitMin(aterm.ATermAppl min,
java.util.List<Input> inputs)
|
private void |
visitNamedClass(aterm.ATermAppl namedClass,
java.util.Collection<aterm.ATermAppl> supers,
java.util.List<Input> inputs,
boolean isSuperClass)
|
private void |
visitNamedClass(aterm.ATermAppl namedClass,
java.util.List<Input> inputs,
boolean isSuperClass)
|
private void |
visitOneOf(java.util.Iterator<aterm.ATermAppl> enumeration,
java.util.List<Input> inputs)
|
private void |
visitSomeValues(aterm.ATermAppl someValues,
java.util.List<Input> inputs)
|
private void |
visitUnionOf(java.util.Iterator<aterm.ATermAppl> union,
java.util.List<Input> inputs)
|
| Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
LOGGER
protected static final org.apache.log4j.Logger LOGGER
IS_ATOMIC
private static final com.google.common.base.Predicate<java.lang.Object> IS_ATOMIC
IS_PROPERTY
private static final com.google.common.base.Predicate<java.lang.Object> IS_PROPERTY
IS_ENUMERATED
private static final com.google.common.base.Predicate<java.lang.Object> IS_ENUMERATED
IS_UNRESTRICTED
private static final com.google.common.base.Predicate<Input> IS_UNRESTRICTED
HAS_LABEL
private static final com.google.common.base.Predicate<Input> HAS_LABEL
reasoningService
private ReasoningServiceImpl reasoningService
kb
private org.mindswap.pellet.KnowledgeBase kb
visitedTerms
private SSWAPDeserializer.VisitedTerms visitedTerms
cachedDefinitions
private java.util.Map<aterm.ATermAppl,java.util.Set<aterm.ATermAppl>> cachedDefinitions
SSWAPDeserializer
public SSWAPDeserializer()
deserialize
public Input deserialize(SSWAPType type)
- Description copied from interface:
InputDeserializer
- Deserializes an
Input instance from the given object.
- Specified by:
deserialize in interface InputDeserializer<SSWAPType>
cacheDefinitions
private void cacheDefinitions()
setLabelDescription
private void setLabelDescription(Input input,
aterm.ATermAppl term)
isRestriction
private boolean isRestriction(aterm.ATermAppl cls)
visit
private Input visit(aterm.ATermAppl cls)
createInputFromList
private Input createInputFromList(java.util.List<Input> inputs)
copyLabelAndDescription
private void copyLabelAndDescription(Input source,
Input target)
visit
private void visit(aterm.ATermAppl cls,
java.util.List<Input> inputs,
boolean isSuperClass)
argIterator
private java.util.Iterator<aterm.ATermAppl> argIterator(aterm.ATermAppl term)
createValue
private InputValue createValue(aterm.ATermAppl term)
propertyInputs
private com.google.common.collect.UnmodifiableIterator<PropertyInput> propertyInputs(java.util.List<Input> inputs,
java.net.URI prop)
visitNamedClass
private void visitNamedClass(aterm.ATermAppl namedClass,
java.util.List<Input> inputs,
boolean isSuperClass)
visitNamedClass
private void visitNamedClass(aterm.ATermAppl namedClass,
java.util.Collection<aterm.ATermAppl> supers,
java.util.List<Input> inputs,
boolean isSuperClass)
visitIntersectionOf
private void visitIntersectionOf(java.util.Iterator<aterm.ATermAppl> intersection,
java.util.List<Input> inputs)
visitIntersectionOf
private void visitIntersectionOf(java.util.Iterator<aterm.ATermAppl> intersection,
java.util.List<Input> inputs,
boolean isSuperClass)
visitUnionOf
private void visitUnionOf(java.util.Iterator<aterm.ATermAppl> union,
java.util.List<Input> inputs)
visitOneOf
private void visitOneOf(java.util.Iterator<aterm.ATermAppl> enumeration,
java.util.List<Input> inputs)
addDomainRestrictions
private void addDomainRestrictions(aterm.ATermAppl p,
java.util.List<Input> inputs)
createRangeInput
private Input createRangeInput(aterm.ATermAppl p,
Input additionalRange)
visitAllValues
private void visitAllValues(aterm.ATermAppl allValues,
java.util.List<Input> inputs)
visitSomeValues
private void visitSomeValues(aterm.ATermAppl someValues,
java.util.List<Input> inputs)
visitMin
private void visitMin(aterm.ATermAppl min,
java.util.List<Input> inputs)
visitMin
private void visitMin(aterm.ATermAppl p,
int cardinality,
aterm.ATermAppl type,
java.util.List<Input> inputs)
visitMax
private void visitMax(aterm.ATermAppl max,
java.util.List<Input> inputs)
visitCard
private void visitCard(aterm.ATermAppl card,
java.util.List<Input> inputs)
Copyright (c) 2011, iPlant Collaborative, University of Arizona, Cold Spring Harbor Laboratories, University of Texas at Austin.